Cracking joints is actually good for the joints. It pops the air bubbles which is what makes the noise and streches the ligaments like you would a muscles. And being able to pop more than just your knuckles is normal.
I started with my fingers when I was young. It then led to my back and neck. That's about it. Sometimes my hips pop if I stretch them, or knees crack if I squat for an extended period of time then stand up, but nothing out of the ordinary. She may grow out of it.